Why Claims Are Denied and What Providers Can Do

November 21, 2025 | RCA Team
Healthcare office worker and administrator reviewing digital documents on tablet

Across the revenue cycle, few issues consume more time, labor, and uncompensated effort than denials, particularly those associated with prior authorization. They interrupt cash flow, add administrative burden, and force already short-staffed teams to navigate a maze of requirements that shift constantly.

From hospitals and rural facilities to clinics, physician groups, and ambulance services, the underlying reality is the same: Denials are a structural feature of the reimbursement system, not a reflection of operational failure alone.

Understanding how they really work and why they happen is the first step in reducing preventable loss.

What a Denial Really Is

A denial is a payer determination that interrupts or eliminates expected reimbursement. 

The denial may be:

  • temporary
  • final
  • technical
  • documentation-driven
  • medical-necessity-based
  • or, increasingly, the result of automated claim logic

But the outcome is always the same: a delay in payment, or a loss of payment that must be challenged.

From the provider’s perspective, denials are not “disputes.”

They are workload multipliers that create additional tasks, shorten timelines, and strain business offices already operating with limited capacity.

Structural Drivers of Denials

Denials rarely stem from a single issue. They arise from a convergence of operational strain, payer behavior, and documentation requirements that no team can fully control.

Below are the root causes providers encounter across every setting.

1. Administrative Filters

Many denials occur long before anyone reviews clinical details, if they’re even reviewed by a human at all.

Common administrative triggers include:

  • missing or inconsistent demographic data
  • eligibility mismatches
  • authorization not linked correctly in the claim
  • claim format or code combination rejected by automated systems
  • “included in payment” logic applied incorrectly
  • bundling edits or modifier mismatches

These denials have little to do with care quality. They reflect administrative thresholds that payers use to slow or screen incoming claims.

2. Documentation Gaps that Payers Exploit

Documentation does not need to be wrong to trigger a denial. It only needs to be insufficient for the payer’s definition of necessity or accuracy.

Common examples include:

  • missing detail in physician notes
  • insufficient justification of medical necessity
  • absent or incomplete ambulance run sheets
  • lack of vitals or monitoring documentation
  • inconsistencies between clinical notes and coding levels

These denials persist even in organizations with strong clinical documentation practices, because payer expectations often exceed what is required for clinical care.

For structured guidance on medical-necessity and level-of-care denials, see our clinical appeals playbook outlining the five-step process we use to overturn clinical denials across all payers.

3. Coding and Level-of-Service Disputes

While these denials can stem from coding mistakes, they more often reflect payers applying the lowest-cost interpretation of a service unless the provider pushes back. Even when coding is accurate and well-documented, plans routinely reduce service levels or remove add-on codes based on proprietary logic that is not reflected in publicly available policy.

Common examples include:

  • automatic downcoding of ED visits
  • reduction of E/M levels despite clear complexity
  • reclassifying ambulance ALS transports as BLS
  • limiting or denying add-on codes
  • narrowing visit-level criteria beyond standard coding guidance

These denials are the result of payers interpreting coding criteria in a way that minimizes payment unless the provider challenges the determination.

4. Clawbacks and Reversals

A frequent frustration for clinicians and billing teams:

  • a service is authorized
  • the claim is submitted
  • the claim is paid
  • months later, the payer reverses the decision

This post-payment review loop is common across Medicare Advantage and certain commercial plans, with the denial coming long after staff believe the account is resolved. 

These retroactive determinations are particularly destabilizing because they reopen claims staff believed were resolved, pulling time away from current work and creating sudden, unpredictable cash-flow gaps.

5. AI-Driven Screening and Automated Denials

A growing share of denials now originate from automated decision systems rather than human review. These tools evaluate claims using predictive algorithms, utilization models, and proprietary logic intentionally designed to limit payment. The result is an increasing number of denials that arrive instantly, without clinical assessment, and often without reference to any published standard.

Common examples include:

  • denials issued instantly the moment a claim is received
  • reductions or downcodes based on predicted “typical” service levels
  • denials that reference internal logic clinicians cannot locate in policy
  • clusters of identical denials triggered by a single automated rule
  • retroactive reviews initiated by AI auditing tools rather than clinical inconsistencies

These systems are built to reduce payment volume early in the process. Once deployed, they create large clusters of denials that appear suddenly and require significant manual follow-up, even when documentation and coding are sound.

6. Clinical Review Structures Built to Deny

Even when a claim reaches a human reviewer, the process is not designed to evaluate the clinical picture; it is designed to identify reasons to withhold or reduce payment. Providers routinely encounter clinical reviews that apply narrow, unpublished criteria, rely on outdated guidelines, or require documentation that extends far beyond standard clinical practice.

Common patterns include:

  • reviewers defaulting to denial when documentation is complete but not phrased to match internal templates
  • clinical criteria interpreted in the strictest possible way to minimize approval
  • denials issued despite treating clinicians confirming medical necessity
  • level-of-care determinations that contradict both documentation and physician judgment
  • reviews conducted by clinicians who are not specialists in the relevant field

These reviews rarely function as true checks on clinical appropriateness. Instead, they operate as another administrative layer where the default outcome is delay, reduction, or denial of payment.

For providers, this means that even when a claim passes administrative checks, meets coding requirements, and aligns with payer policy, it may still be denied because the clinical review process is designed to favor the payer’s lowest-cost interpretation—not the clinician’s judgment or the patient’s needs.

The Added Burden: Denial Volume Outpacing Staff Capacity

Even when denials are straightforward to fix, teams may not have time to touch them.

Providers routinely face:

  • dozens of payer portals
  • thousands of denials per month
  • short appeal windows
  • staffing shortages
  • turnover that erases institutional knowledge
  • inconsistent training
  • surges in MA documentation requirements

Capacity limitations magnify the impact of every denial. When volume exceeds staff bandwidth, preventable losses compound quickly.

The Denial You Don’t See: Missed Appeal Windows

One of the largest sources of preventable revenue loss comes from denials that are never appealed at all. With growing staffing shortages and teams stretched thin, this is simply an operational reality. In our reviews of 835 remittance data, we consistently see that a large share of appealable denials never get worked simply because the appeal window closes before staff can reach them.

Providers miss appeal windows because:

  • remits arrive faster than staff can process them
  • appeal deadlines vary widely by payer
  • some plans start the clock before the denial is visible
  • EOBs arrive out of sequence
  • MA plans deliver retroactive denials with immediate deadlines
  • documentation requests go unnoticed in portal queues

When the appeal window closes, the denial becomes final, even if the claim was valid. These silent losses add up quickly.

The System-Level Role of Denials

Denials do not function as occasional corrections. They operate as a routine mechanism through which payers manage utilization and reduce payment. Each denial—whether administrative, documentation-driven, automated, or clinical—shifts work and risk onto the provider. Instead of a straight path to payment, providers face a series of administrative gates designed to slow claims, create friction, and reduce what ultimately gets paid.

These mechanisms have been intentionally created by insurance companies to form a system where:

  • cash is delayed at multiple points
  • routine work expands into repeated rework
  • operational risk sits almost entirely with the provider
  • appeals become part of standard workflow, not exception
  • reimbursement is reduced by attrition rather than clinical disagreement
  • payers retain more premium dollars by reducing the volume and speed of paid claims

The financial cost is significant, but the operational cost is often worse. Timelines compress, backlogs grow, and already stretched teams must devote more time to correcting issues that were engineered into the process. Over time, the cumulative effect is a revenue cycle where denials are not an anomaly—they are a predictable, structural feature of the system.

What Providers Can Realistically Do

Reducing denials does not require sweeping transformation. Most gains come from stabilizing the processes that matter most.

1. Focus on the highest-volume codes

A small number of codes drive a large percentage of preventable denials. Understanding these patterns allows teams to target the root causes.

Concrete Action:

Identify the top five denial codes from the past 60 days and sort them by both volume and preventability. Most organizations find that these five codes represent 40–60% of their total denial workload.

2. Reinforce documentation clarity

Alignment between clinical documentation and payer expectations prevents downstream disputes.

Concrete Action:

Review a random sample of 25 denied claims and compare clinical documentation directly to the payer’s published criteria. The discrepancies that appear in this small sample almost always mirror broader organizational patterns.

3. Standardize front-end workflows

Clean claims begin with:

  • accurate eligibility
  • correct plan selection
  • authorization capture
  • complete intake documentation

Small improvements here prevent large downstream denials.

Concrete Action:

Audit 10 recent denials for front-end root causes. If more than three have registration or eligibility discrepancies, frontend workflows should be reassessed.

4. Track appeal deadlines in a structured way

This is the single most effective way to reduce silent loss.

Concrete Action:

Create a simple appeal-timeline tracker segmented by payer. Even a basic spreadsheet with “date of remit,” “appeal deadline,” and “date appealed” immediately reduces preventable loss.

5. Monitor 835 patterns

The 835 remittance file reveals:

  • denial clusters
  • payer logic
  • timing issues
  • automated workflows
  • predictable edits

Even minimal analysis can surface trends teams do not see day-to-day. 

For a deeper look at how 835 analysis reveals payer behavior, evolving denial trends, and hidden underpayments, see our guide on using 835 data to reduce denials. While it’s written with hospitals in mind, the same patterns apply across clinics, physician groups, and ambulance services.

Concrete Action:

Review a single month of 835 remittance files to identify denial clusters. Patterns appear quickly—often long before they’re visible in day-to-day claim work.

6. Use simple automation to reduce rework and surface patterns early

Many of the tasks that consume denial-management time—checking claim status, finding missing remits, sorting 835s, or gathering documentation—are repetitive workflows that can be automated with tools most organizations already own. Basic automation does not replace staff; it removes manual steps so teams can reclaim their time.

Common examples include:

  • using Power BI or Excel to flag denial spikes or unpaid claims over a certain age
  • automating payer portal checks for stalled or pending claims
  • creating simple alerts for zero-pay remits or missing attachments
  • using HIPAA-compliant GPT drafting to speed up low-dollar appeal letters
  • building quick scripts or RPA bots for repetitive follow-up steps

Concrete Action:
Identify one repetitive task that slows down denial work—such as monitoring MA documentation requests or sorting remittances—and automate it using tools already available in your EMR, clearinghouse, or Microsoft 365 environment. Even one automated step can free meaningful capacity.

If you want examples of the kinds of small automations that reduce rework (Power BI alerts, basic RPA steps, or GPT-assisted appeal drafting) our AI in Revenue Cycle Management guide walks through options that most providers can implement with existing resources. Reach out to us at [email protected] and we’ll send it over.

7. Escalate workloads when internal capacity is exceeded

No team can keep pace with rising denial volumes indefinitely. If your denial queue grows faster than staff can work it for more than two consecutive months, the backlog is not likely to correct itself. At that point, outside support may be necessary to stabilize revenue.

Concrete Action:

Establish a simple capacity threshold—such as denial queue growth exceeding 10% for two consecutive months—and create a triage plan that prioritizes appealable, high-value claims first. Once lower-priority claims begin aging past their appeal windows, it’s a signal to explore external relief.

A Practical Denial-Reduction Checklist

Providers see the fastest improvement when they turn routine denial monitoring into a simple, repeatable workflow. The steps below require little more than existing data and consistent follow-through:

  • Identify the top five denial codes and determine which ones are truly preventable
  • Audit 10–25 recent denials to confirm the primary root causes
  • Align documentation with payer criteria for the highest-volume denial types
  • Verify eligibility and authorization capture accuracy at the front end
  • Track appeal deadlines by payer to prevent avoidable write-offs
  • Review one month of 835 files to spot early payer-pattern changes
  • Address staffing bottlenecks before backlogs begin to grow

Turning Familiar Knowledge Into Steady Practice

Denials are not random events or signs of operational weakness. They are the predictable outcome of a system built on administrative friction, shifting requirements, and payment avoidance. Providers see the impact every day: rising workloads, compressed timelines, shrinking appeal windows, and preventable revenue slipping away.

But improvement doesn’t have to mean a major overhaul. It comes from small, consistent habits—clarifying documentation, stabilizing front-end checks, tracking deadlines, watching 835 patterns, and automating a few repetitive tasks. 

No provider can eliminate denials entirely, but every provider can regain control over how much revenue is lost to them—and how much time and effort is spent fighting them. 

About the Authors

This post was prepared by members of the Revenue Cycle Associates team, drawing on our decades of experience working directly with healthcare providers on revenue cycle challenges. We aim to translate complex and evasive payer strategies into clear, actionable insights for providers nationwide.

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